Estimated Number of Cells : The number of barcodes considered as cell-associated. The cell calling method used for this sample is auto.
Fraction Reads in Cells : The fraction of uniquely-mapped-to-transcriptome reads with cell-associated barcodes.
Mean Reads per Cell : The number of valid reads divided by the estimated number of cells.
Median UMI per Cell : The median number of UMI counts per cell-associated barcode.
Total Genes : The number of genes with at least one UMI count in any cell.
Median Genes per Cell : The median number of genes detected per cell-associated barcode.
Saturation : The fraction of UMI originating from an already-observed UMI. There is a difference in how CeleScope and CellRanger calculate saturation. CeleScope shows umi_saturation in the report, while CellRanger shows read_saturation in the report. For details, see here. read_saturation: 28.98%.